PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538590.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 645aa MW: 69410.8 Da PI: 6.5618

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.2e-15	259	318	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023538590.1 259 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 318 57*****************666664478446***********************98 PP
2	AP2	46.5	9.1e-15	361	412	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023538590.1 361 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDTAAIKFRG 412 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence
MGSMNWLGFS LSPQEQHSDH HHGGVGGGVD GDGPFTSDNI SGSAVCFDNL PSSYGVYEPF 60 HRNNHSQDWN NLKGLGSAQS SDFSALIETQ QPPKLENFLG HHSFTDHDHA VVYTNASGNY 120 MFQNCSLELP SDPANCGGGG KTNDNANNNG SSIGLSMMKT WLRNQPAPPQ AVAKYGGDHD 180 GAVRSGNITN AHSLSLSMNT GPPAAALPLL TANGGGSGGE SSSSDNKQAK SASAEVDGEN 240 GAVEAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQVYLGGYD 300 KEEKAARAYD LAALKYWGST TTTNFPISDY EKEMEDMKHM TRQEFVASLR RKSSGFSRGA 360 SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDTAAIKF RGLNAVTNFD 420 MSRYDVKAIL ESNTLPIGGA AKRLKDIVHS DIDPQRSDEN ITSHLSDGII TAAAAPYGGG 480 GWPSLAFHHH PYAFHYPYAA TQQRLWCKQE HDATVAAADN FFPHGGAMDS MDHGVYSGGG 540 SGDGYGGNFL ISMAATGAEA GSSSSNNNGG GLGEIGEVNL FGCSSNVDDP YHATRTTTNL 600 YDYNNSSHQL PPPTTALQQC NNWLPPARTV CHGGAPPPFT IWNDT

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence

MGSMNWLGFS LSPQEQHSDH HHGGVGGGVD GDGPFTSDNI SGSAVCFDNL PSSYGVYEPF  60
HRNNHSQDWN NLKGLGSAQS SDFSALIETQ QPPKLENFLG HHSFTDHDHA VVYTNASGNY  120
MFQNCSLELP SDPANCGGGG KTNDNANNNG SSIGLSMMKT WLRNQPAPPQ AVAKYGGDHD  180
GAVRSGNITN AHSLSLSMNT GPPAAALPLL TANGGGSGGE SSSSDNKQAK SASAEVDGEN  240
GAVEAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQVYLGGYD  300
KEEKAARAYD LAALKYWGST TTTNFPISDY EKEMEDMKHM TRQEFVASLR RKSSGFSRGA  360
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDTAAIKF RGLNAVTNFD  420
MSRYDVKAIL ESNTLPIGGA AKRLKDIVHS DIDPQRSDEN ITSHLSDGII TAAAAPYGGG  480
GWPSLAFHHH PYAFHYPYAA TQQRLWCKQE HDATVAAADN FFPHGGAMDS MDHGVYSGGG  540
SGDGYGGNFL ISMAATGAEA GSSSSNNNGG GLGEIGEVNL FGCSSNVDDP YHATRTTTNL  600
YDYNNSSHQL PPPTTALQQC NNWLPPARTV CHGGAPPPFT IWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-136	AP2 family protein