PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538735.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24235.6 Da PI: 9.7719

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.5e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLC+a+va+iifsstgkl e++s XP_023538735.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCEADVALIIFSSTGKLCEFAS 59 8***********************************************86 PP
2	K-box	65.3	2.2e-22	84	170	12	98
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++a L k ie+L+ ++R+llG++L+s s++eLqq++qqL++sl ++R++K+e+++eqi++l++kek l en++L kk+ XP_023538735.1 84 PHHHDQADQAATLLKGIESLEVSKRKLLGQGLGSSSYEELQQIQQQLQRSLAHVRATKHEVYKEQIDQLKEKEKYLAAENEKLAKKY 170 45666678899999*********************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCE ADVALIIFSS TGKLCEFASS 60 SMQATVERFQ RHTRETHHLE RSLPHHHDQA DQAATLLKGI ESLEVSKRKL LGQGLGSSSY 120 EELQQIQQQL QRSLAHVRAT KHEVYKEQID QLKEKEKYLA AENEKLAKKY LVQLEPRQSL 180 TQVGEVSPYL ETSLTFDVET DLFIGPPKSR SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	3e-66	MIKC_MADS family protein