PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538736.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 180aa    MW: 20642.6 Da    PI: 10.042
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.6e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLC+a+va+iifsstgkl e++s
  XP_023538736.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCEADVALIIFSSTGKLCEFAS 59
                    8***********************************************86 PP
2K-box65.61.8e-22851691397
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++     ++a L k ie+L+ ++R+llG++L+s s++eLqq++qqL++sl ++R++K+e+++eqi++l++kek l  en++L kk
  XP_023538736.1  85 HHHDQADQAATLLKGIESLEVSKRKLLGQGLGSSSYEELQQIQQQLQRSLAHVRATKHEVYKEQIDQLKEKEKYLAAENEKLAKK 169
                     5566677899999*********************************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCE ADVALIIFSS TGKLCEFASS  60
SMQATVERFQ RHTRETHHLE RSLPHHHDQA DQAATLLKGI ESLEVSKRKL LGQGLGSSSY  120
EELQQIQQQL QRSLAHVRAT KHEVYKEQID QLKEKEKYLA AENEKLAKKG HKTDEVKCIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.19e-66MIKC_MADS family protein