PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538823.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 31419.2 Da PI: 8.4983

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.5e-18	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_023538823.1 127 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKRLNLRPRQVEVWFQNRRARTK 181 788899***********************************************98 PP
2	HD-ZIP_I/II	125.6	2.2e-40	127	215	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr + XP_023538823.1 127 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELR-S 215 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGGSDDELCL SLSLGFGVTT QPSFIHRPSN SMINHLRRSS WKDAFQVSDR NVDSRSFLRG 60 IDVNRLRTAV DGEEENGVSS PNSTVSSISG KRSEREAVGD EAEAERTSCS RGSDDEDGGD 120 GDGDASRKKL RLSKEQSLVL EETFKEHNTL NPKQKLALAK RLNLRPRQVE VWFQNRRART 180 KLKQTEVDCE YLRRCCENLT EENRRLQKEV QELRSLKLSP QLYMHMNPPT TLTMCPQCER 240 VAVSSFSSTS AASTRHPVAA GMQQRPSMPI APQAVLPIQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	SRKKLRL
2	176	184	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	5e-86	HD-ZIP family protein