PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538956.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25771.1 Da    PI: 10.4318
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR+ g++KK +ELS+LC++e++ i+fs+
  XP_023538956.1 11 IVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSP 50
                    789************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MTRKKVKLAY IVNDSARKAT FKKRKRGLMK KVSELSTLCG IEACAIVFSP YDAQPELWPS  60
PIGVQRVLSQ FKKMPEMEQS KKMVNQETFL RQRIAKANDQ LKKMRKDNRE KEMTRLMFQS  120
LTAAKGLHAL NMLDLNDLTW LIDQNLKDIT KRIDSLKKPP PHSQPHPHPH PHPQPPPPPQ  180
TAAWLMELVS PQDQMGFVGD DMLLPFGDQT YSHNNAMWSN AFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYIVNDSARKATFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-66M-type_MADS family protein