PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539026.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 147aa    MW: 16802.6 Da    PI: 9.0006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.9e-1434123597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                     l++s+v   +++ +p kf +             +   +g++W++ + y +++g+ + tk W++Fv++n+Lk gD +vF+l+  + s  +++v+++
  XP_023539026.1  34 LSKSHVAPICNMFMPAKFHSVLPA---IM-IPAVLYCEGKKWKIDY-YGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIeCSsSVIKFRVQIL 123
                     667888888888888888643322...22.22445569********.8888888999**********************9944445555666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MQSQEKPPTE PTEMQPQNSR ILPLSGKPYH GVILSKSHVA PICNMFMPAK FHSVLPAIMI  60
PAVLYCEGKK WKIDYYGNRR GKALDTKQWR KFVNDNHLKC GDACVFELIE CSSSVIKFRV  120
QILRGDIPFE LHEKFSGESR NTPILID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-10B3 family protein