PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539085.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 188aa MW: 21330.9 Da PI: 11.373

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.2	2.6e-11	122	144	1	23
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+++fpr XP_023539085.1 122 LDDGYRWRKYGQKGVKNNKFPRE 144 59*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MMESYPDFLS ASSSSTSLSF QKMLISRASE PTGIHGSQFR EAAISGGFPL FPDVSGSYMS 60 VGTRSSTKED MVSVSKGSAV EVVEGGAETT EMTAARQGDN DKKKKTRSRR FAFQTRSQVD 120 ILDDGYRWRK YGQKGVKNNK FPRERNRRRR RGRGRGTHIT LHPNWERRSN PREILVSRIN 180 RKFCGNRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	153	RERNRRRRRGR
2	145	155	RERNRRRRRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	8e-18	WRKY family protein