PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539156.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 192aa    MW: 21203.1 Da    PI: 8.406
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY205.61.8e-63141756168
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk.eelleelkveeenlksnvekeesastsvsse 99 
                     ss+++Cyv+Cn C+t+lavsvP +slfk+v vrCGhC++ll vn++    ll++ +h++++    + +++   e ++ + n +++++   +    
  XP_023539156.1  14 SSDHLCYVHCNICDTVLAVSVPCASLFKTVIVRCGHCANLLPVNMRGG-MLLPSPNHFHHTAFfSPNAHNFLEEISDPNPNFVMNQT---DGIDL 104
                     79****************************************998875.67899999988754133344444444444444443333...33333 PP

           YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn.WahfPkihf 168
                      + +   ++vpr+pp +++P ek+qrvPsaynrfikeeiqrika+nPdishreafsaaakn WahfP+ih+
  XP_023539156.1 105 VMATRVGNNVPRPPPsINKPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNqWAHFPHIHN 175
                     457788899***99989*******************************************99********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MSSFSLPTTP PPPSSDHLCY VHCNICDTVL AVSVPCASLF KTVIVRCGHC ANLLPVNMRG  60
GMLLPSPNHF HHTAFFSPNA HNFLEEISDP NPNFVMNQTD GIDLVMATRV GNNVPRPPPS  120
INKPAEKKQR VPSAYNRFIK EEIQRIKAAN PDISHREAFS AAAKNQWAHF PHIHNFGVPP  180
PNNNTNNTNN TP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-54YABBY family protein