PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539158.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 191aa    MW: 21074.9 Da    PI: 8.406
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY212.31.6e-65141746168
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk.eelleelkveeenlksnvekeesastsvsse 99 
                     ss+++Cyv+Cn C+t+lavsvP +slfk+v vrCGhC++ll vn++    ll++ +h++++    + +++   e ++ + n +++++   +    
  XP_023539158.1  14 SSDHLCYVHCNICDTVLAVSVPCASLFKTVIVRCGHCANLLPVNMRGG-MLLPSPNHFHHTAFfSPNAHNFLEEISDPNPNFVMNQT---DGIDL 104
                     79****************************************998875.67899999988754133344444444444444443333...33333 PP

           YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                      + +   ++vpr+pp +++P ek+qrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ih+
  XP_023539158.1 105 VMATRVGNNVPRPPPsINKPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHN 174
                     457788899***99989****************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MSSFSLPTTP PPPSSDHLCY VHCNICDTVL AVSVPCASLF KTVIVRCGHC ANLLPVNMRG  60
GMLLPSPNHF HHTAFFSPNA HNFLEEISDP NPNFVMNQTD GIDLVMATRV GNNVPRPPPS  120
INKPAEKKQR VPSAYNRFIK EEIQRIKAAN PDISHREAFS AAAKNWAHFP HIHNFGVPPP  180
NNNTNNTNNT P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-56YABBY family protein