PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539408.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 255aa    MW: 28863.5 Da    PI: 8.3704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
   XP_023539408.1 14 KGPWAAEEDQILISFIQKHGHANWRALPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding513.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  ++ ++++lG++ W++Ia+ ++ gRt++++k++w+++l
   XP_023539408.1  67 RGNFTREEQNTILYLHEKLGNR-WSAIAAQLP-GRTDNEIKNFWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVRAPCCQKT GLKKGPWAAE EDQILISFIQ KHGHANWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEQNTILY LHEKLGNRWS AIAAQLPGRT DNEIKNFWHT HLKKRAMKKQ  120
SNDSAIVEPK SKPPQKLNSS NQYEFPSSSL DHSSVTDSPA AVWGGCNEIE KEQRIEIFEA  180
FHQTGGGVWA EEASNGPMFK SSAFNDEEQV QSLFRAMDSM EFGCYYDNGS SMNDGMEFWY  240
SVFVKAGGSL NHPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-72MYB family protein