PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539439.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 469aa MW: 51260.1 Da PI: 6.4549

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.7e-17	138	187	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023539439.1 138 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDKAAIKFRG 187 78*****************......55**********************997 PP
2	AP2	40.3	7.6e-13	230	280	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+ +lg f+++ eAa+a++ a+++ +g XP_023539439.1 230 SKYRGVTLHK-CGRWEARMGQFL---GRKYMYLGLFDSEIEAARAYDIAALRCNG 280 89******.7**55532...26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MLNLNHDVVP SEMVTENFLN LPANRMETAG CFNSSSVVNG DPSASTTNVD EVFPFTFGKN 60 SAVQESSTVK SLSISDDHRD QTMEFFPLTD GLNSSSSTQK QWPEVSPSEF NHGDGGAPAQ 120 PQDQTMRKNR RGPRPRSSQY RGVTYYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDK 180 AAIKFRGVDA DINFSVKNYE EDIKQMSNIS KEELIHNLRR RSNGFTRGSS KYRGVTLHKC 240 GRWEARMGQF LGRKYMYLGL FDSEIEAARA YDIAALRCNG KEAVTNFDPS SYMSEMAAET 300 DTGEDNQSLD LSLRIAPPNH SDPQSESIGM FGNGCHLSSP DIVVDGRATL ENSVTAAIGS 360 SQPYGYAVPS NSCFFPISRE RAAETRMGEW QIHGHSNGLT SVPFFSAAAS SGFLSSSSSS 420 SSSSSSSSSS SSSSTSSSSA ISSSAVGEIH FSAIFHHHDS NLSNFYCRN

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MLNLNHDVVP SEMVTENFLN LPANRMETAG CFNSSSVVNG DPSASTTNVD EVFPFTFGKN  60
SAVQESSTVK SLSISDDHRD QTMEFFPLTD GLNSSSSTQK QWPEVSPSEF NHGDGGAPAQ  120
PQDQTMRKNR RGPRPRSSQY RGVTYYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDK  180
AAIKFRGVDA DINFSVKNYE EDIKQMSNIS KEELIHNLRR RSNGFTRGSS KYRGVTLHKC  240
GRWEARMGQF LGRKYMYLGL FDSEIEAARA YDIAALRCNG KEAVTNFDPS SYMSEMAAET  300
DTGEDNQSLD LSLRIAPPNH SDPQSESIGM FGNGCHLSSP DIVVDGRATL ENSVTAAIGS  360
SQPYGYAVPS NSCFFPISRE RAAETRMGEW QIHGHSNGLT SVPFFSAAAS SGFLSSSSSS  420
SSSSSSSSSS SSSSTSSSSA ISSSAVGEIH FSAIFHHHDS NLSNFYCRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	4e-78	AP2 family protein