PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539548.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C2H2
Protein Properties Length: 229aa    MW: 24668.8 Da    PI: 4.9281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06126147223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C+k+F+++  L  H+r+H
  XP_023539548.1 126 RCATCNKVFKSWKALFGHLRSH 147
                     6********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MEKNANTNVP PETSSDQRHG GERSPTGPTS PQPTHNRDNN PNPTTEHSSY SDRLPVPPAA  60
ETSRRDGLFD VGTSYENIVG SSEGEPGKKR GRGGGEEEEE QQPPPQQVKA AKKKGELTEV  120
PKGEPRCATC NKVFKSWKAL FGHLRSHPER TYRGALPPPT AAELDIRRCQ QQLASTLLTV  180
AQEVAASRRG LDIDLNQPST ADDGDSPEKT GGVGFDLNAD PPPGSDDED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793GKKRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.16e-18C2H2 family protein