PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539604.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 367aa MW: 41238.8 Da PI: 6.8394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	136	187	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P++ + ++ + a+i A++++k+L+ XP_023539604.1 136 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YIQRGDQASIIGGAIDFVKELE 187 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MERLQGPINP SFYGACSDMG CSRQELSSLE FDEFDEAYLF TSSLDEKMPF LHMLQCVEEP 60 FKEPSFQNLL KLQQHLSNDK PWQQEVNSAS CRVSPECNQN GGLCRTQMEN APLPTKERRK 120 RKRLRPAKNK EEVESQRMTH IAVERNRRRQ MNDHLNVIKS LIPTSYIQRG DQASIIGGAI 180 DFVKELEQLL ECLEAQRKER KGEGDEEGSP TSSSATGMAS NGRIGEGVYA EVKSEVGEIE 240 VTMIQAHVNL KIKCPKRQGQ LLKAIVALED LRLSVLHLNI STSQATATVL YSFNLKIEDE 300 CKLGSAVQIA GAVHEILSFI SDGSQVNEXE GKFQAVQWQW LTMEGSCFAL PCLALPCLPK 360 RKTKKSK

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MERLQGPINP SFYGACSDMG CSRQELSSLE FDEFDEAYLF TSSLDEKMPF LHMLQCVEEP  60
FKEPSFQNLL KLQQHLSNDK PWQQEVNSAS CRVSPECNQN GGLCRTQMEN APLPTKERRK  120
RKRLRPAKNK EEVESQRMTH IAVERNRRRQ MNDHLNVIKS LIPTSYIQRG DQASIIGGAI  180
DFVKELEQLL ECLEAQRKER KGEGDEEGSP TSSSATGMAS NGRIGEGVYA EVKSEVGEIE  240
VTMIQAHVNL KIKCPKRQGQ LLKAIVALED LRLSVLHLNI STSQATATVL YSFNLKIEDE  300
CKLGSAVQIA GAVHEILSFI SDGSQVNEXE GKFQAVQWQW LTMEGSCFAL PCLALPCLPK  360
RKTKKSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	124	ERRKRKRL
2	118	123	RRKRKR
3	137	148	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-70	bHLH family protein