 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_023539795.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 1167aa MW: 129652 Da PI: 8.824 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
W+ +E e++++a +++G++ Wk++a+ + +R+ +++
XP_023539795.1 46 QWSRDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81
6*****************99.*********.**98875 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1167 aa Download sequence |
MAPSRKSRSV NKRLSSANEA SSSKYLEAPS KGKQKKRKFA DLLGPQWSRD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLMRCQR 120 DSESEQESNE DSGATRKPQK RLRGKSRNNN SKGLDAHFGD ASQSQSLPTN YGCLSLLKKR 180 RSGIKPHAVG KRTPRVPVSY SYDKDSRERI FSPSRHTSKL KVDDPNDDDV AHEIALVLTE 240 ASQRDGSPQL SQTPNPKIEG HVLSPIRNDR MRSESDMMST KFRCSEMDEG GCELSLGSTG 300 ADNADYDQGK NTREIQRKGK RYYGKKAEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL 360 ETEDFDVKSV RTSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDTT ADTEPSAKVK 420 EENLDVMDKS KMKGNHSVVG AGISASKTSK TGKASGNNVG PIPEAEGIQG SNNGNRKRKQ 480 KSSPFKISSK DEDSNDSRVN DTPKTKATDD GKSSFGKVKR SPHNAGLAKS SKISKPLDHH 540 SSSSTDHKRE DGDYALSTTQ VPSINPISLP TKMRSRRKMD LLKSQRDSKI ADNILIDQLN 600 VTAHSLDDRP HDLKEQHSNC LSWHKLRRWC VFEWLYSAID FPWFAKCEFV EYLNHVGLGH 660 IPRLTRVEWG VIRSSLGRPR RFSAQFLKEE KQKLNQYRES VRKHYAELRA GTREGLPTDL 720 ARPLSVGQRV IAIHPKTREI HDGSVLTVDY SRCRVQFDRP ELGVEFVMDI ECMPLNPVEN 780 MPANLSRHGV TLDKIFGNLN EVKINGLLKE AKIEDYIKST SNDKLESTDG SVFISPSTHH 840 INKLIKQAKV DLGCSNLQTK FGLNETVGIQ QEASSQLSVL AQIQAKEADV HALSELSRAL 900 DKKEVVVSEL KRLNDEVLEN QINGDNLLKD SENFKKQYAA VLLQLNEVNE QVSSALYSLR 960 QRNTYQGTSP LMFLKPVHDL GDPCSHAQEP GSHVAEIVGS SRAKAQTMID EAMQAILALK 1020 KRESNLENIE EAIDFVSNKL SVDDLALPTV KSTSADTSNA TPVSQNHFNA GASNPSAANY 1080 VVGSKSNSPS DKPEVEIPSE LIAHCVATLL MIQKCTERQF PPADVAQVLD SAVNSLQPCC 1140 PQNLPLYAEI QKCMGIIRSQ ILALIPT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 476 | 506 | RKRKQKSSPFKISSKDEDSNDSRVNDTPKTK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G21430.2 | 0.0 | MYB_related family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|