PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539796.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1163aa MW: 129133 Da PI: 8.8019

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ +E e++++a +++G++ Wk++a+ + +R+ +++ XP_023539796.1 46 QWSRDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
MAPSRKSRSV NKRLSSANEA SSSKYLEAPS KGKQKKRKFA DLLGPQWSRD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES 120 EQESNEDSGA TRKPQKRLRG KSRNNNSKGL DAHFGDASQS QSLPTNYGCL SLLKKRRSGI 180 KPHAVGKRTP RVPVSYSYDK DSRERIFSPS RHTSKLKVDD PNDDDVAHEI ALVLTEASQR 240 DGSPQLSQTP NPKIEGHVLS PIRNDRMRSE SDMMSTKFRC SEMDEGGCEL SLGSTGADNA 300 DYDQGKNTRE IQRKGKRYYG KKAEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETED 360 FDVKSVRTSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDTTADTE PSAKVKEENL 420 DVMDKSKMKG NHSVVGAGIS ASKTSKTGKA SGNNVGPIPE AEGIQGSNNG NRKRKQKSSP 480 FKISSKDEDS NDSRVNDTPK TKATDDGKSS FGKVKRSPHN AGLAKSSKIS KPLDHHSSSS 540 TDHKREDGDY ALSTTQVPSI NPISLPTKMR SRRKMDLLKS QRDSKIADNI LIDQLNVTAH 600 SLDDRPHDLK EQHSNCLSWH KLRRWCVFEW LYSAIDFPWF AKCEFVEYLN HVGLGHIPRL 660 TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELRAGTRE GLPTDLARPL 720 SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN 780 LSRHGVTLDK IFGNLNEVKI NGLLKEAKIE DYIKSTSNDK LESTDGSVFI SPSTHHINKL 840 IKQAKVDLGC SNLQTKFGLN ETVGIQQEAS SQLSVLAQIQ AKEADVHALS ELSRALDKKE 900 VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS ALYSLRQRNT 960 YQGTSPLMFL KPVHDLGDPC SHAQEPGSHV AEIVGSSRAK AQTMIDEAMQ AILALKKRES 1020 NLENIEEAID FVSNKLSVDD LALPTVKSTS ADTSNATPVS QNHFNAGASN PSAANYVVGS 1080 KSNSPSDKPE VEIPSELIAH CVATLLMIQK CTERQFPPAD VAQVLDSAVN SLQPCCPQNL 1140 PLYAEIQKCM GIIRSQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

MAPSRKSRSV NKRLSSANEA SSSKYLEAPS KGKQKKRKFA DLLGPQWSRD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES  120
EQESNEDSGA TRKPQKRLRG KSRNNNSKGL DAHFGDASQS QSLPTNYGCL SLLKKRRSGI  180
KPHAVGKRTP RVPVSYSYDK DSRERIFSPS RHTSKLKVDD PNDDDVAHEI ALVLTEASQR  240
DGSPQLSQTP NPKIEGHVLS PIRNDRMRSE SDMMSTKFRC SEMDEGGCEL SLGSTGADNA  300
DYDQGKNTRE IQRKGKRYYG KKAEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETED  360
FDVKSVRTSF KGPRKRSKKA LFGDECSAFD ALQTLADLSL MMPDTTADTE PSAKVKEENL  420
DVMDKSKMKG NHSVVGAGIS ASKTSKTGKA SGNNVGPIPE AEGIQGSNNG NRKRKQKSSP  480
FKISSKDEDS NDSRVNDTPK TKATDDGKSS FGKVKRSPHN AGLAKSSKIS KPLDHHSSSS  540
TDHKREDGDY ALSTTQVPSI NPISLPTKMR SRRKMDLLKS QRDSKIADNI LIDQLNVTAH  600
SLDDRPHDLK EQHSNCLSWH KLRRWCVFEW LYSAIDFPWF AKCEFVEYLN HVGLGHIPRL  660
TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELRAGTRE GLPTDLARPL  720
SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN  780
LSRHGVTLDK IFGNLNEVKI NGLLKEAKIE DYIKSTSNDK LESTDGSVFI SPSTHHINKL  840
IKQAKVDLGC SNLQTKFGLN ETVGIQQEAS SQLSVLAQIQ AKEADVHALS ELSRALDKKE  900
VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVNEQVSS ALYSLRQRNT  960
YQGTSPLMFL KPVHDLGDPC SHAQEPGSHV AEIVGSSRAK AQTMIDEAMQ AILALKKRES  1020
NLENIEEAID FVSNKLSVDD LALPTVKSTS ADTSNATPVS QNHFNAGASN PSAANYVVGS  1080
KSNSPSDKPE VEIPSELIAH CVATLLMIQK CTERQFPPAD VAQVLDSAVN SLQPCCPQNL  1140
PLYAEIQKCM GIIRSQILAL IPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	502	RKRKQKSSPFKISSKDEDSNDSRVNDTPKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein