PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539921.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 482aa MW: 51906.1 Da PI: 8.3648

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.2e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_023539921.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP
2	zf-CCCH	38.3	2.2e-12	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtG Ck+G +Ck++H++ XP_023539921.1 96 QPLCQYYMRTGMCKFGTSCKYHHPQ 120 79*********************97 PP
3	zf-CCCH	35.8	1.3e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_023539921.1 141 GEKECSYYLKNGQCKFGATCKFHHPE 166 6789********************96 PP
4	zf-CCCH	38.9	1.5e-12	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++C+++H+p XP_023539921.1 305 PGQPECQFYMRTGDCKFGSSCRYHHPP 331 5789*********************97 PP
5	zf-CCCH	35.5	1.7e-11	353	377	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+Ck+G+ CkF H++ XP_023539921.1 353 APPCTHFMQRGICKFGPACKFDHSM 377 689********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERSAVLG GGSRPGGRDY PERVGQPLCQ YYMRTGMCKF GTSCKYHHPQ 120 QEMGSLSPVS LNFYGYPLRQ GEKECSYYLK NGQCKFGATC KFHHPEPAGL QFPVPSPVQV 180 APLPAPMPPA PSVYPPVQSP SAHSSQQYGV ILARSPMLSS PYVPSPYGPM LVSPGIVQFP 240 SWNPYQAPMS PVASPSAQPS VGSGQLYGMA QVSPSAPAYA GSYQPMPSAG ASSTSQKEHS 300 FPERPGQPEC QFYMRTGDCK FGSSCRYHHP PELVNSRSSV VLSQIGLPLR PGAPPCTHFM 360 QRGICKFGPA CKFDHSMERL SYSPSASSLA DMPVAPYPVG SVVGTLAPSF SSSELRPEHF 420 SGPRMDSNPS RMSSSMSTSS GLAGSTTSRT EMHSHSNVQR SSQSSGLSAS STSSTTSVEG 480 RT

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MKPYGQSMEG SQSDPSPEWT ASGPDTGHGE PVWPLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERSAVLG GGSRPGGRDY PERVGQPLCQ YYMRTGMCKF GTSCKYHHPQ  120
QEMGSLSPVS LNFYGYPLRQ GEKECSYYLK NGQCKFGATC KFHHPEPAGL QFPVPSPVQV  180
APLPAPMPPA PSVYPPVQSP SAHSSQQYGV ILARSPMLSS PYVPSPYGPM LVSPGIVQFP  240
SWNPYQAPMS PVASPSAQPS VGSGQLYGMA QVSPSAPAYA GSYQPMPSAG ASSTSQKEHS  300
FPERPGQPEC QFYMRTGDCK FGSSCRYHHP PELVNSRSSV VLSQIGLPLR PGAPPCTHFM  360
QRGICKFGPA CKFDHSMERL SYSPSASSLA DMPVAPYPVG SVVGTLAPSF SSSELRPEHF  420
SGPRMDSNPS RMSSSMSTSS GLAGSTTSRT EMHSHSNVQR SSQSSGLSAS STSSTTSVEG  480
RT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-129	C3H family protein