PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023539940.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30099.7 Da    PI: 6.715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023539940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1998152256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q  +Le+ F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_023539940.1  98 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 152
                     78889************************************************98 PP
2HD-ZIP_I/II130.37.8e-4298187191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_023539940.1  98 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 187
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MMSSKHDNLS LSLGLSFDSH YLQLNLRPSW NDHASSDRTS ENRMPPSPVD CEEEEEEEEA  60
AVSSPNSTVS TVSGKRSEPE TNNGEDLDGD EEDAETSRKK LRLTKDQSAV LEDSFKEHNT  120
LNPKQKLALA KQLGLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCCENL TEENRRLQKE  180
VQELRALKLS PQFYMHMAPP TTLTMCPSCE RVAVPSSTSA PLNVTRMGPA QAQAQAQSKA  240
LHSRPIHVNP WASAIPARPF NALHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103SRKKLRL
2147155RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.19e-70HD-ZIP family protein