PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539978.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HSF

Protein Properties

Length: 470aa MW: 52407.1 Da PI: 7.2732

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.1	2.8e-33	18	108	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++++++++++sw+++++sfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgFkk+++e+ weF+++ F k++k+ll++ XP_023539978.1 18 FLIKTYDMVDESATDKIVSWTSSKKSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFKKIDSER---------WEFANDDFIKDQKHLLKN 103 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_023539978.1 104 IHRRK 108 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MEGAAGGGGT GGAGPAPFLI KTYDMVDESA TDKIVSWTSS KKSFVVWNPP EFARLLLPTF 60 FKHNNFSSFI RQLNTYGFKK IDSERWEFAN DDFIKDQKHL LKNIHRRKPI HSHSTPPGSL 120 GDPERAAFED EIDRLSRKKT TLEADISRFK QQKSTAKTQL QDLTVKVESM EKRQKNLLAF 180 LEKAVQNPSF VEHLARRVES MDFTAFNKKR RLPSADHSQP VLENSFLDNH SSSRSGSGNI 240 FHQDFSHKMR LETSSVSDIN LLSCSTQSSN EGGGSSQRNM SKLDTRGVQE SHHFAAETLD 300 LSDTGTSFVL KRDSSLSGKS PNDESPCLHS LQPNVSSKED GESHISCHLN LTLASSSLRV 360 NDADYLGRMP QLGQNLRKSS GSKVNSNGKE SDMRLFTKNI NLDEGTTTLC LKETSSNNHG 420 PPANPVRVND VFWEQFLTER PGCPESEEAS SNYRENLYKE PDEGRSGLSL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MEGAAGGGGT GGAGPAPFLI KTYDMVDESA TDKIVSWTSS KKSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFKK IDSERWEFAN DDFIKDQKHL LKNIHRRKPI HSHSTPPGSL  120
GDPERAAFED EIDRLSRKKT TLEADISRFK QQKSTAKTQL QDLTVKVESM EKRQKNLLAF  180
LEKAVQNPSF VEHLARRVES MDFTAFNKKR RLPSADHSQP VLENSFLDNH SSSRSGSGNI  240
FHQDFSHKMR LETSSVSDIN LLSCSTQSSN EGGGSSQRNM SKLDTRGVQE SHHFAAETLD  300
LSDTGTSFVL KRDSSLSGKS PNDESPCLHS LQPNVSSKED GESHISCHLN LTLASSSLRV  360
NDADYLGRMP QLGQNLRKSS GSKVNSNGKE SDMRLFTKNI NLDEGTTTLC LKETSSNNHG  420
PPANPVRVND VFWEQFLTER PGCPESEEAS SNYRENLYKE PDEGRSGLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-144	HSF family protein