PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540310.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 466aa MW: 50987.2 Da PI: 9.7402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540310.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023540310.1 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	12.2	0.00054	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_023540310.1 139 WKCDKCSKKYAVQSDWKAHSKTC 161 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MSSNPFSLLS STTTPFVPHQ DANPKSKPST AAKKKRNLPG TPDPDAEVIA LSPKSLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL 120 GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF 180 ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD 240 NFLRDFEEHQ HKNRSPLSLW LNQASVDNAM NNNNNNISHF FGASSSSSNL FGSMTESGLS 300 VLPVIEKEDV DNKGSLSKAT AAASLLGQSS QSFVSSSPMS ATALLQKAAL MGSTRSSNNN 360 NSPLFGAGAF GVMSSSSSSL NSFNKSRSST MADSIQMVGN NSDMSSDCLN QLLLPPNDSN 420 KMRSSGQTRD FLGVGGGEAP RPPFLPPELA KFAAINSTMG LSQFNH

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MSSNPFSLLS STTTPFVPHQ DANPKSKPST AAKKKRNLPG TPDPDAEVIA LSPKSLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD  240
NFLRDFEEHQ HKNRSPLSLW LNQASVDNAM NNNNNNISHF FGASSSSSNL FGSMTESGLS  300
VLPVIEKEDV DNKGSLSKAT AAASLLGQSS QSFVSSSPMS ATALLQKAAL MGSTRSSNNN  360
NSPLFGAGAF GVMSSSSSSL NSFNKSRSST MADSIQMVGN NSDMSSDCLN QLLLPPNDSN  420
KMRSSGQTRD FLGVGGGEAP RPPFLPPELA KFAAINSTMG LSQFNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-103	C2H2 family protein