PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540345.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 619aa MW: 68367.9 Da PI: 6.0952

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.1e-13	444	490	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq XP_023540345.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 490 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MKIEDGLRGV GGKDEDKTVV AAVLGTRAFN YMMSCSVSNE NLFMAVRNDD NLQNKLADLV 60 ETPNASNFCW NYAIFWQLSH SKSGQWVLGW GDGSFRDPRD GEGTEATQIL SLELEDESQQ 120 RMKKRALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPGGEGG PGKCFASGKH 180 VWHLDVLNSP AEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVHLIRSLF 240 SSQRSLDGVR TSAVMSRMAE RKDENAPFPS LGIAERGGGV PKVFGQSLNL GNVGRSHFRE 300 KLAVRKMDER AWEVCPNGGR IQFQSPRNGI RNPSLGHVHL LKPGNPTETL GSPTPPVNNN 360 HEQLVNGVRD EFCLNPYQSQ KIAQMQIDFS VATSRPPSVM NRVGADSEQL DIEPQCKEEG 420 PGTDERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAIAYINELQ SKVKAMEYER EQSGVTSSEA TPSDTNPEIE NKDQFLDVDI NVEAGNDEVI 540 VKVSCPLESH PASRVIKAMK NAQINVVDSK LSVEVNDTVL HTFTIKSPGS EQLTKEELIA 600 TISSISRDST PLHPLSTVG

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MKIEDGLRGV GGKDEDKTVV AAVLGTRAFN YMMSCSVSNE NLFMAVRNDD NLQNKLADLV  60
ETPNASNFCW NYAIFWQLSH SKSGQWVLGW GDGSFRDPRD GEGTEATQIL SLELEDESQQ  120
RMKKRALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPGGEGG PGKCFASGKH  180
VWHLDVLNSP AEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVHLIRSLF  240
SSQRSLDGVR TSAVMSRMAE RKDENAPFPS LGIAERGGGV PKVFGQSLNL GNVGRSHFRE  300
KLAVRKMDER AWEVCPNGGR IQFQSPRNGI RNPSLGHVHL LKPGNPTETL GSPTPPVNNN  360
HEQLVNGVRD EFCLNPYQSQ KIAQMQIDFS VATSRPPSVM NRVGADSEQL DIEPQCKEEG  420
PGTDERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAIAYINELQ SKVKAMEYER EQSGVTSSEA TPSDTNPEIE NKDQFLDVDI NVEAGNDEVI  540
VKVSCPLESH PASRVIKAMK NAQINVVDSK LSVEVNDTVL HTFTIKSPGS EQLTKEELIA  600
TISSISRDST PLHPLSTVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	426	434	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-180	bHLH family protein