PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540383.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 480aa MW: 52214.2 Da PI: 7.9447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	321	368	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023540383.1 321 SHSLAERIRREKISKRMKFLQDLVPGC----DKITGKAVMLDEIINYVQSLQ 368 8***********************9....899***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS 60 GGGGGDNLMM RELIGRLGSI CSSGEISPHS YIGGTNNNST NTSCYNTPLN SPPMKGNLSV 120 GHHQNLAPFS ADPGFAERVA RFSCFGNKNL AVNGQLCSNE TQELSNKSMA GAGVESGKLS 180 RVSSNKSFNV SGIGSQMGVQ KGNSMANKKV MNRFSRSSTP ENDDSREGSS VSEQITAGEL 240 GFKVNTRKRK SAQTGEAKNV KAAGENREPN GKKIKPEMDA AKGKAEAKDA TQKQNNDNSK 300 PPEPPKDYIH VRAKRGQATD SHSLAERIRR EKISKRMKFL QDLVPGCDKI TGKAVMLDEI 360 INYVQSLQHQ VEFLSMKLAT VNPRMDFNME TLLPKDIFKG SSSLPHTTYP IDSSVPTFAY 420 EYQSMNIPPL HSDQTQGGYR EMGNGIQISK FWEDELHSVV QMGYGQTQLQ NPHGEMKSEL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MEKEFFMNDG SSFYGMDSSV LFNSNWENSM DQSDLFESTL SSIVSSPANS HAGAVIGGGS  60
GGGGGDNLMM RELIGRLGSI CSSGEISPHS YIGGTNNNST NTSCYNTPLN SPPMKGNLSV  120
GHHQNLAPFS ADPGFAERVA RFSCFGNKNL AVNGQLCSNE TQELSNKSMA GAGVESGKLS  180
RVSSNKSFNV SGIGSQMGVQ KGNSMANKKV MNRFSRSSTP ENDDSREGSS VSEQITAGEL  240
GFKVNTRKRK SAQTGEAKNV KAAGENREPN GKKIKPEMDA AKGKAEAKDA TQKQNNDNSK  300
PPEPPKDYIH VRAKRGQATD SHSLAERIRR EKISKRMKFL QDLVPGCDKI TGKAVMLDEI  360
INYVQSLQHQ VEFLSMKLAT VNPRMDFNME TLLPKDIFKG SSSLPHTTYP IDSSVPTFAY  420
EYQSMNIPPL HSDQTQGGYR EMGNGIQISK FWEDELHSVV QMGYGQTQLQ NPHGEMKSEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	251	TRKRKS
2	247	275	RKRKSAQTGEAKNVKAAGENREPNGKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-81	bHLH family protein