PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540492.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 302aa    MW: 33720.7 Da    PI: 6.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  ++ q+G+++W++I++  g+ R++k+c++rw +yl
   XP_023540492.1 14 RGQWTPEEDNKLSSYISQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding42.51.5e-1368110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+++   G++ W++Ia+ +  gRt++++k++w++
   XP_023540492.1  68 GQFSDMEEQTIVKLHSVVGNR-WSLIAAQLT-GRTDNDVKNHWNT 110
                      789******************.********9.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGRIPCCEKE NVKRGQWTPE EDNKLSSYIS QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDMEEQTIVK LHSVVGNRWS LIAAQLTGRT DNDVKNHWNT KLKKKLSAPP  120
QVAHLAEAAL GCFKDEMLHL LTKKCVDFQL QQANVPPGSS SGTYNHNNQN EKDGTVENIK  180
LGLSRAIQQS DLITPYKPWN STDATTTNLE GTSNCFPAST SGFQYPPPSF GNEGDVPSWS  240
QSMCTGSTCT GGEQQGQLHE ILEEHREELS EGGKEMRNGT SIFSSDSVLW DLPCDDLMNP  300
IV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-93MYB family protein