PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540580.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 768aa MW: 85514 Da PI: 6.3651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	6.1e-08	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + XP_023540580.1 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MQTDSILSSN SETHLLSETI IAHVGDQGIA ASTPDRVIEP LPAKRPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KTVRKRPLQG ENCPPPMPNA 180 VSNQSRALGH DGRAVKLVLV DTQNIPKLGH RKTASRCNVN VGINRGNNGG YPTVLKPSRP 240 RRKSGVSSAA YKKWEKAAIA GVSLVADAAE HLERTITNRD VLHNQNTVGE KNSDPAGSPL 300 LLLAPLQPNS LIDVANTKLK LQLFPVDDGT RRALELDKHN PHLELTLSTR KKISSVLEHL 360 SRKWGNSSAA HGALMLFPYS MQKKCLAECQ RWTQDSFESA GDVYAAIGRP QVFRLRYGWC 420 SNTEHGSPEL QTSVPAYCIQ DDHIIDARDI DGRIVDLASI NDQPVGLNKD EVGTLNDNMS 480 TPTVPNETER FICGRLDDLP RSSDPTLNIS WDKKDVADRT FIRRSDDVDD LKLSNETSLS 540 AGEWADSLTN INIGDLLSGV SQDVDPNCID TPLAEGIQCL QQIPFSCDSF DAAIAAHISR 600 QQDKTVSQPT LASHVSSIWD AEETCDAFSF QKNPVILQEV PSSSPFSSLQ GYKHIARTYS 660 MESSHMAEEL LSDSPPEDHN QGDPMDECQS DPQISETKDL NELADIYWPD SLGPLDLDLP 720 STNKYHSEDL ILGDSLSSLN RLIASSLDAF QNCSFFGLDK KESSTFNS

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MQTDSILSSN SETHLLSETI IAHVGDQGIA ASTPDRVIEP LPAKRPTRQW AAWTREEEES  60
FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KTVRKRPLQG ENCPPPMPNA  180
VSNQSRALGH DGRAVKLVLV DTQNIPKLGH RKTASRCNVN VGINRGNNGG YPTVLKPSRP  240
RRKSGVSSAA YKKWEKAAIA GVSLVADAAE HLERTITNRD VLHNQNTVGE KNSDPAGSPL  300
LLLAPLQPNS LIDVANTKLK LQLFPVDDGT RRALELDKHN PHLELTLSTR KKISSVLEHL  360
SRKWGNSSAA HGALMLFPYS MQKKCLAECQ RWTQDSFESA GDVYAAIGRP QVFRLRYGWC  420
SNTEHGSPEL QTSVPAYCIQ DDHIIDARDI DGRIVDLASI NDQPVGLNKD EVGTLNDNMS  480
TPTVPNETER FICGRLDDLP RSSDPTLNIS WDKKDVADRT FIRRSDDVDD LKLSNETSLS  540
AGEWADSLTN INIGDLLSGV SQDVDPNCID TPLAEGIQCL QQIPFSCDSF DAAIAAHISR  600
QQDKTVSQPT LASHVSSIWD AEETCDAFSF QKNPVILQEV PSSSPFSSLQ GYKHIARTYS  660
MESSHMAEEL LSDSPPEDHN QGDPMDECQS DPQISETKDL NELADIYWPD SLGPLDLDLP  720
STNKYHSEDL ILGDSLSSLN RLIASSLDAF QNCSFFGLDK KESSTFNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	243	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.1	0.0	MYB_related family protein