PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540670.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ERF
Protein Properties Length: 199aa    MW: 22533.5 Da    PI: 8.6682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-1978127255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp     +  r++lg++ tae+Aa+a+++a+ +++g
  XP_023540670.1  78 KYRGIRRRP-WGKWAAEIRDPH----KgYRVWLGTYNTAEDAARAYDQAAIRIRG 127
                     8********.**********72....35*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MCGGAMASDF VQPKSSGKSV VDNHLWPQLD TFSDLSGKTD PNNPANGLEI QSRLSQGEKP  60
EEFEAGEKEK VKRVRKNKYR GIRRRPWGKW AAEIRDPHKG YRVWLGTYNT AEDAARAYDQ  120
AAIRIRGKKA KLNFTHPPPP PPPSPPLPLQ PQPLATPTDV ELKDQISRLE SFLCLDPEPT  180
PDLWWVDELL AYQDQNRIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17286KRVRKNKYRGIRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-24ERF family protein