PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540671.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 264aa    MW: 30553.2 Da    PI: 6.378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrW++eEdell ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_023540671.1 14 RGRWSAEEDELLTNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding54.13.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E++ +v+ ++ +G++ W++Ia++m+ gRt++++k++w+++l
   XP_023540671.1  67 RGNITADEEQMIVKMHNAFGNR-WSLIASHMP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MVRAPCCEKV GLKRGRWSAE EDELLTNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRRDLKRGNI TADEEQMIVK MHNAFGNRWS LIASHMPGRT DNEIKNYWNS HLSRRIYTVT  120
RPSAKSTSPI MGILDIIPAP KRRKNTTDRA SRQQTNAIEG KTIPPHIEKE EKEEGLSSKD  180
SKEGEDLGPY DWLDGEIERL NNDPEWIKSN EKMAFEDDVQ NGERSSSSSI NSALEMDQWL  240
NFDWELHKIS SWLWETEIDR CIES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-80MYB family protein