PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540683.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 855aa MW: 94880.9 Da PI: 6.1355

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.5	1e-17	274	373	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlv+pk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_023540683.1 274 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 366 89************************555566778***********99899999999.*******************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_023540683.1 367 LIMGFRK 373 7777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence
MASRTCMNVS CGASSSTEWR KGWALRSGDF ATLCDKCGSA YEQSIFCDVF HLKDSGWREC 60 ASCGKNLHCG CIASKFLMEL HDSGGVNCIS CAKDLELHIT GTSEKLNGLG TPQVQNSGAL 120 QTLLVEDDNS DRIRLVQQGN KAEGNELRES LLLQSNDKTG SLVQMKHEEN ISLVKDVGYV 180 SSLEFNQATT NGLNETAKQE ICKADNGTKF TYDSLAFGCG LEPNASMVSQ VRVARPPAEG 240 RGRNQLLPRY WPRITDQELQ QISGASNSTV VPLFEKMLSA SDAGRIGRLV VPKACAEAYF 300 PPISQPEGLP IRIQDIKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR 360 MDPEGKLIMG FRKASSSSIM QDTHPNALST AGGHSSEFFS SVFENLPMLS GHSSLLQSLK 420 GNMDPHLNLL PGYFNQPGAD MSWQKAEKHD DKSREGLLLS SMLAPERKRT RNIGSKSKRL 480 LVDCQDALEL KLKWDEVQDL LRPPPTVKPS KFVIEDHEFE EYEEPPVFGK RSIFLVRSNR 540 GQEQWAQCDD CSKWRKLPVD VLLPSKWTCV ENIWDQSMSS CSTPEELTTR ELEHILRLNK 600 EFKRQRTLAF SRPIQDHESS GLDALANAAT LGDNVSDPGT ASVATTTRHP RHRPGCSCIV 660 CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQKNQ LKWGSRDETE 720 LDNTSRHVSL NLGPSENEAQ LTNESRSQSN LVETGKDQLD LNCHPDQENE VQGVSNRVSM 780 MSLVQIASLP LETYLKQNGL TSLLPEPQVS LASSHAPVQG ANEVEGAMND DDGCFASSAQ 840 DQESEGEEIC EKDQS

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence

MASRTCMNVS CGASSSTEWR KGWALRSGDF ATLCDKCGSA YEQSIFCDVF HLKDSGWREC  60
ASCGKNLHCG CIASKFLMEL HDSGGVNCIS CAKDLELHIT GTSEKLNGLG TPQVQNSGAL  120
QTLLVEDDNS DRIRLVQQGN KAEGNELRES LLLQSNDKTG SLVQMKHEEN ISLVKDVGYV  180
SSLEFNQATT NGLNETAKQE ICKADNGTKF TYDSLAFGCG LEPNASMVSQ VRVARPPAEG  240
RGRNQLLPRY WPRITDQELQ QISGASNSTV VPLFEKMLSA SDAGRIGRLV VPKACAEAYF  300
PPISQPEGLP IRIQDIKGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR  360
MDPEGKLIMG FRKASSSSIM QDTHPNALST AGGHSSEFFS SVFENLPMLS GHSSLLQSLK  420
GNMDPHLNLL PGYFNQPGAD MSWQKAEKHD DKSREGLLLS SMLAPERKRT RNIGSKSKRL  480
LVDCQDALEL KLKWDEVQDL LRPPPTVKPS KFVIEDHEFE EYEEPPVFGK RSIFLVRSNR  540
GQEQWAQCDD CSKWRKLPVD VLLPSKWTCV ENIWDQSMSS CSTPEELTTR ELEHILRLNK  600
EFKRQRTLAF SRPIQDHESS GLDALANAAT LGDNVSDPGT ASVATTTRHP RHRPGCSCIV  660
CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQKNQ LKWGSRDETE  720
LDNTSRHVSL NLGPSENEAQ LTNESRSQSN LVETGKDQLD LNCHPDQENE VQGVSNRVSM  780
MSLVQIASLP LETYLKQNGL TSLLPEPQVS LASSHAPVQG ANEVEGAMND DDGCFASSAQ  840
DQESEGEEIC EKDQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	684	695	KRRFKTLMMRKK
2	684	697	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein