PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540970.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 427aa MW: 46886.6 Da PI: 8.2545

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.1	4e-17	73	132	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g XP_023540970.1 73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 132 57*****************766644468557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MASSSSDPAF KHEPGASCAA AAGGGTPESS EVVMANDQLL LYRGFKKAKK ERGCTAKERI 60 SKMPPCAAGQ RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDEEEAAA 120 RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQTVSREEYL ASLRRKSSGF SRGISKYRGL 180 SSPFGRMPGL DCVNSIIYGA GDDQATVSEF IHNFCIERKI DLTSYIKWWG PNKNRTSSVG 240 SKLSEEDKHS SVGEVDSELK ALGQTTCPTE PYEMPCLGTL HGVKKVASKV SALSILSRSA 300 AYKSLQQKAL KLEEINNEND ENENKNSVNK IDHGKAVETH ASHGGDPSEK YGVAFGASGG 360 LPLQRNMFPL TPFLTAPLLS SYNTVDPLGD PIHWTSLVSV LPTGLSRTAE VTKTETSSTY 420 TLFRPEE

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MASSSSDPAF KHEPGASCAA AAGGGTPESS EVVMANDQLL LYRGFKKAKK ERGCTAKERI  60
SKMPPCAAGQ RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDEEEAAA  120
RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQTVSREEYL ASLRRKSSGF SRGISKYRGL  180
SSPFGRMPGL DCVNSIIYGA GDDQATVSEF IHNFCIERKI DLTSYIKWWG PNKNRTSSVG  240
SKLSEEDKHS SVGEVDSELK ALGQTTCPTE PYEMPCLGTL HGVKKVASKV SALSILSRSA  300
AYKSLQQKAL KLEEINNEND ENENKNSVNK IDHGKAVETH ASHGGDPSEK YGVAFGASGG  360
LPLQRNMFPL TPFLTAPLLS SYNTVDPLGD PIHWTSLVSV LPTGLSRTAE VTKTETSSTY  420
TLFRPEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.1	1e-144	AP2 family protein