PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541145.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 404aa MW: 45416.8 Da PI: 5.2584

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.7	3.2e-14	81	140	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg+ + +e Aa+ ++ a++k++g XP_023541145.1 81 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQVYLGNXDNEEAAARTYDLAALKYWG 140 57*****************777788866447***********************98 PP
2	AP2	52.9	9e-17	183	234	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_023541145.1 183 SKYRGVARHHYNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRG 234 89**************99966...3.5***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSISPSASSC SSSSSSCVGS DSAINIKKKK NNLSAPLRPH SEKARIKRRR RNQDESKREI 60 HNNNSSGINN NNNASSARRS SIYRGVTRHR WTGRFEAHLW DKSSWNSIQN KKGRQVYLGN 120 XDNEEAAART YDLAALKYWG PETTLNFPAE SYTNEMEEMR KVTKEEYLAS LRRRSSGFSR 180 GVSKYRGVAR HHYNGRWEAR IGRVFGSKYL YLGTYNTQEE AAAAYDMAAI EYRGPNAVTN 240 FDISNYIGRR LETKSSVFEA AELPKEEPND SPVSSEGEVV YQPEEQQTTS WPSLQFSTML 300 PSIENSPSMG VMGDDQDLNW SFLDTGFVEV PDLPLEKTSE LADLYFDEIG FEDDIGLMFE 360 TSIEDGKEDL NVGKMEMNNA PSPSSSSIIT NSVSCEKDEI VGFC

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSISPSASSC SSSSSSCVGS DSAINIKKKK NNLSAPLRPH SEKARIKRRR RNQDESKREI  60
HNNNSSGINN NNNASSARRS SIYRGVTRHR WTGRFEAHLW DKSSWNSIQN KKGRQVYLGN  120
XDNEEAAART YDLAALKYWG PETTLNFPAE SYTNEMEEMR KVTKEEYLAS LRRRSSGFSR  180
GVSKYRGVAR HHYNGRWEAR IGRVFGSKYL YLGTYNTQEE AAAAYDMAAI EYRGPNAVTN  240
FDISNYIGRR LETKSSVFEA AELPKEEPND SPVSSEGEVV YQPEEQQTTS WPSLQFSTML  300
PSIENSPSMG VMGDDQDLNW SFLDTGFVEV PDLPLEKTSE LADLYFDEIG FEDDIGLMFE  360
TSIEDGKEDL NVGKMEMNNA PSPSSSSIIT NSVSCEKDEI VGFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	50	KKKKNNLSAPLRPHSEKARIKRRR
2	28	51	KKKKNNLSAPLRPHSEKARIKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	8e-94	AP2 family protein