PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023541229.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 751aa    MW: 83638.2 Da    PI: 5.9968
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023541229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-2155110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+ +qVk+WFqNrR+++k
  XP_023541229.1  55 RKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMK 110
                     7999*************************************************999 PP
2START167.59.3e-532654852205
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     la++a++elvk+a+ + p+W +s      e +n  e+ ++f++s +      ++ea r++++v+ +++ l e+l+d + +W e+++    +a+t+
  XP_023541229.1 265 LALAAMDELVKMAQIDTPLWIRSQdssgkETLNFNEYSRTFPSSAAmkhtnWTTEATRDTTMVIINSMALIETLMDAN-RWAEMFPcliaRATTI 358
                     6899********************9999999999*******99888999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis+g      g lqlm ael +lsplvp R   f+R+++q+ +g w++vdvS+ + ++      +  +++lpSg+++++++ng skvtwveh+
  XP_023541229.1 359 DVISNGmggtrnGSLQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSLGEGADAD---MFFSCRRLPSGCIVQDMPNGFSKVTWVEHT 450
                     ************************************************************87...5***************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++ ++h+l+r++++ g+ +g ++w+atlqrqc 
  XP_023541229.1 451 EYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCD 485
                     *********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MDGYREACLL GDSFDPNGVV RMREDEYDSR SGSDNIDGAV SGDDQDANDE QRRKRKKYHR  60
HTPHQIQELE IFFKECPHPD DKQRSELSRR LGLESKQVKF WFQNRRTQMK TQIERHENAI  120
LKHENDKLRA ENSVMKDAIS NPTCNTCGGP SIPVHLSFEE HQLRIDNARL RDELHRLYTV  180
TNKFLGWPVL PFVNHSSSVS SDSCLELSVG RNGMGNLSNI SDPMPMGLNL GNGLFNGGPV  240
MPISKSQMGM PGNDIPIDRT IYVDLALAAM DELVKMAQID TPLWIRSQDS SGKETLNFNE  300
YSRTFPSSAA MKHTNWTTEA TRDTTMVIIN SMALIETLMD ANRWAEMFPC LIARATTIDV  360
ISNGMGGTRN GSLQLMHAEL RVLSPLVPVR TLKFLRFCKQ HADGLWAVVD VSLGEGADAD  420
MFFSCRRLPS GCIVQDMPNG FSKVTWVEHT EYDETVVHQL YRQIISWGIG FGSQRWLATL  480
QRQCDCLAIL MSSTEDPAGI SPHGRRSMLK LSQRMVDNFC SGICTSTLQK WDKLVVGNIS  540
EDVKMMARNS INDPGEPPGI VLSAATSVWM PVTQQRLFAF LQDECLRSEW DILSNGRPMI  600
EMLRISKGQG LDNRVSLLRA NPMNANENTM LILQESWTDI SGSLIVYAPV DAASVNLVMR  660
GGDSAYVSLL PSGFAILPDG PSNYASTNND KDGPIMSDIN SGYAGGCLLT VAFQILVNNL  720
PTAKLTVESV ETVNNLISCT IQKIKVALRV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein