PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023541268.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family RAV
Protein Properties Length: 326aa    MW: 36133.9 Da    PI: 10.1125
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023541268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.5e-124997155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  + +Aaka++ a+++++g
  XP_023541268.1 49 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNHEHQAAKAYDIAALRFRG 97
                    689***9788.8*********3.....5**********99*************98 PP
2B394.95.3e-30177273192
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     g+ +++++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++   ++
  XP_023541268.1 177 FEKTVTPSDVGKLNRLVIPKQHAEKNfplgeGMGSTKGILLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDK 271
                     99*****************************6667899*************************************************97655665 PP

                     .. CS
              B3  91 el 92 
                     +l
  XP_023541268.1 272 KL 273
                     55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MDTTSSLDDS AASDSTSVSP VTPLLFHSSS SSCPPGVPYD AESRKLPSSR FKGVVPQPNG  60
RWGAQIYEKH QRVWLGTFNH EHQAAKAYDI AALRFRGRDA VTNFKPGAFS SVDAAFEADF  120
LNSHSKLEIV DMLRKHTYND EIQQSKRYGG GTTTTTTAAA AHSLQNAASE SDREVLFEKT  180
VTPSDVGKLN RLVIPKQHAE KNFPLGEGMG STKGILLNFE DMGGKLWRFR YSYWNSSQSY  240
VLTKGWSRFV KEKTLRAGDV VRFLRSTGPD KKLYIDGKPG GVKAVQVVKL FGVNILEVPV  300
GWCGKRDREG LSELERTKKQ RIVKAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-117RAV family protein