PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541306.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 456aa MW: 51503.4 Da PI: 7.2793

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.7e-15	22	66	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++Ed++l + ++q+G+++W+ Ia+++ +t qc+ rw++yl XP_023541306.1 22 SWTQQEDDILREQINQHGTENWAIIASKFK-DKTTRQCRRRWYTYL 66 6**************************9.***********97 PP
2	Myb_DNA-binding	45.2	2.1e-14	72	115	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_023541306.1 72 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 115 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MQDTKKKLTT EDSKKKERHI VSWTQQEDDI LREQINQHGT ENWAIIASKF KDKTTRQCRR 60 RWYTYLNSDF KKGGWSPEED LLLCEAQKIF GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR 120 AKYEALAKEN SSSFINHNNK RVLVQKGSDN VSSETPQLVK RIRRAHISDT TEGCSLEDES 180 ENRPRAPFAV LVDNVHSVDN LPAQLPMNNA QEGLNTTQGN KSQGSFIKKD DPKVAALTQQ 240 AELLSSLALT VNSENTDQSL ENAWKILQDF LRRSKENDIP KYATPDIDFQ VEDIKGLVED 300 LRSSNDGSQW RQPNLHESPG SSEYSTGSTI VSQAVEEKID QSRPEIGTHH QEAQNNIGES 360 EKEILLKTTL EREAFKCCNE RKKDSITSSF SSSEFSSPMH VIPIFRSLAA GIPSPQFSES 420 ERSFLLKTLG VESPSLNPSV NHSQPPPCKR ALLQSL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MQDTKKKLTT EDSKKKERHI VSWTQQEDDI LREQINQHGT ENWAIIASKF KDKTTRQCRR  60
RWYTYLNSDF KKGGWSPEED LLLCEAQKIF GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR  120
AKYEALAKEN SSSFINHNNK RVLVQKGSDN VSSETPQLVK RIRRAHISDT TEGCSLEDES  180
ENRPRAPFAV LVDNVHSVDN LPAQLPMNNA QEGLNTTQGN KSQGSFIKKD DPKVAALTQQ  240
AELLSSLALT VNSENTDQSL ENAWKILQDF LRRSKENDIP KYATPDIDFQ VEDIKGLVED  300
LRSSNDGSQW RQPNLHESPG SSEYSTGSTI VSQAVEEKID QSRPEIGTHH QEAQNNIGES  360
EKEILLKTTL EREAFKCCNE RKKDSITSSF SSSEFSSPMH VIPIFRSLAA GIPSPQFSES  420
ERSFLLKTLG VESPSLNPSV NHSQPPPCKR ALLQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-168	MYB family protein