PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541420.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1536aa MW: 168492 Da PI: 7.6109

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	8.8e-10	958	998	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE ++ +av +G++ ++ I+r++g +++ qck ++ XP_023541420.1 958 SWTDEEKSIFMQAVSSYGKD-FDMISRCVG-SKSRDQCKVFFS 998 7***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1536 aa Download sequence
MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKQGG 60 WHQFSEEASH GYGPSRSFSD RVVENESFRP SVPRGDGKYI RIGRESRGSS SYRDWRSYSR 120 ETTNGFGNPS RRPSSQDVSS DQRSVDDTTT HSSPQSDVVS VSDQIHSKDR NDKVGGAFGS 180 ENGLRSDVEV SLGSTDWKPL KWSRSGSLSS RASAYSSSTN SKNEKADLPL RVSSLIESSS 240 AEATACVTSS LPFEDTISKK KPRLGWGDGL AKFEKYKVEA PDTSMRKEGT LLSSISAELT 300 HSLGSNFSEK SPKTLPFSDC ASPATPSSFA CSSSSGLEDK PFSKAASVDG MKCSSPGSGS 360 QNQLQNFFLS LEKLEISSIA KIGSSLVELF QSDDPNTVES CFGKSTLNKL LAYKSDISKT 420 LEMTESEIDL LENELKSLKS KNRGNVSRSK SCSAIYVKES DGVSCISPRP ASLKVVSTSD 480 STVEKMPVCK NVVGVEDVDT KDEEIDSPGT VMSKFNEPIR TEVTDVIVSD KTGRSLSISE 540 PFVDERNECI RAKSCTGESI CGDSMAQAAS GSSLCDLIFA SNKEYASKAA EVIFGSLPAE 600 MFKISSQSTN FVPCSETEKL IKEKFLMRRQ FLKFKESALT LRFKALQHSW KEGLLHSVKK 660 CRSKPQKKEL SLRVTYSGHQ KYRSSIRSRV VQHGACQNRA SNSEIATRYS SKLLSNPRVR 720 RYRNILKMPA MILDKNEKTA LRFVSNNGLV EDPCAVEKER SMINPWSLAE RELFWEKLSL 780 FGKDFRKISS FLSHKTTADC IQFYYKNHKS DSFKKRKNLD LGKQMKSSTM TYMLTSGKKW 840 NPGVNATSLD ILGVASVMAA QEDSNIGTQL TCARHFDELQ SEKETVAADV LVGICGSISS 900 EPMSSCITSA IHPSEDYREP KCHKVDSATK LPSMSDAMQR TDNEPCSDDS SGDVDSSSWT 960 DEEKSIFMQA VSSYGKDFDM ISRCVGSKSR DQCKVFFSKA RKCLGLDLIR TSEDVGTPRS 1020 GNDASGSGTD SEAHYVVEGA RSSEEIGSKS VDGFSEFGES TAFQQSEAKR AEAVRNLFSE 1080 TSKEVEEDAP NLDSHSACNL ANARASPSQP KPVHDHKIEG SSENTEAGSN RCNEPNVLRS 1140 ESMSTVDENS TAISESGAVM KLAFGEEKGS NSNLHAQSIL QCLVQDSSGI DPQISHPNFL 1200 KVDSVEKSCK LEVRDAPKRP MNRDGYAERE NHLLRHVGSS EFPCSHPFNK PIIEDMNRTI 1260 NHTSFPVVRA LSKPDINCNS TYVAEEQECR LQNCNSSKPC HRSAELPFSP PNVEFGHDHR 1320 KNTSRSGSAS DSDVPCRKGD VKLFGQILSH APSQQNSSSG SNECGTKKGL HKSSSTYDMG 1380 ENAPSRSYGF WDGNGLQTGL SAMPDSIVLQ AKYPAAFSGY AATSVKTEQQ PLLTLTKNDD 1440 QAYKTVDGVK KRPYPVDIFS EIHRRNGFDS LSLASLQQQG RMLVGMNVVG RGGIVVGNSC 1500 TGISDPVAAI KMHYAKADQY VDGSWRGGNG DIGSSR

Sequence ? help Back to Top

Protein Sequence Length: 1536 aa Download sequence

MPPEPLPWDR KDLFKERKHE KSEAIGSATR WRDSYHGSRE FNRWGSADFR RPTGHGKQGG  60
WHQFSEEASH GYGPSRSFSD RVVENESFRP SVPRGDGKYI RIGRESRGSS SYRDWRSYSR  120
ETTNGFGNPS RRPSSQDVSS DQRSVDDTTT HSSPQSDVVS VSDQIHSKDR NDKVGGAFGS  180
ENGLRSDVEV SLGSTDWKPL KWSRSGSLSS RASAYSSSTN SKNEKADLPL RVSSLIESSS  240
AEATACVTSS LPFEDTISKK KPRLGWGDGL AKFEKYKVEA PDTSMRKEGT LLSSISAELT  300
HSLGSNFSEK SPKTLPFSDC ASPATPSSFA CSSSSGLEDK PFSKAASVDG MKCSSPGSGS  360
QNQLQNFFLS LEKLEISSIA KIGSSLVELF QSDDPNTVES CFGKSTLNKL LAYKSDISKT  420
LEMTESEIDL LENELKSLKS KNRGNVSRSK SCSAIYVKES DGVSCISPRP ASLKVVSTSD  480
STVEKMPVCK NVVGVEDVDT KDEEIDSPGT VMSKFNEPIR TEVTDVIVSD KTGRSLSISE  540
PFVDERNECI RAKSCTGESI CGDSMAQAAS GSSLCDLIFA SNKEYASKAA EVIFGSLPAE  600
MFKISSQSTN FVPCSETEKL IKEKFLMRRQ FLKFKESALT LRFKALQHSW KEGLLHSVKK  660
CRSKPQKKEL SLRVTYSGHQ KYRSSIRSRV VQHGACQNRA SNSEIATRYS SKLLSNPRVR  720
RYRNILKMPA MILDKNEKTA LRFVSNNGLV EDPCAVEKER SMINPWSLAE RELFWEKLSL  780
FGKDFRKISS FLSHKTTADC IQFYYKNHKS DSFKKRKNLD LGKQMKSSTM TYMLTSGKKW  840
NPGVNATSLD ILGVASVMAA QEDSNIGTQL TCARHFDELQ SEKETVAADV LVGICGSISS  900
EPMSSCITSA IHPSEDYREP KCHKVDSATK LPSMSDAMQR TDNEPCSDDS SGDVDSSSWT  960
DEEKSIFMQA VSSYGKDFDM ISRCVGSKSR DQCKVFFSKA RKCLGLDLIR TSEDVGTPRS  1020
GNDASGSGTD SEAHYVVEGA RSSEEIGSKS VDGFSEFGES TAFQQSEAKR AEAVRNLFSE  1080
TSKEVEEDAP NLDSHSACNL ANARASPSQP KPVHDHKIEG SSENTEAGSN RCNEPNVLRS  1140
ESMSTVDENS TAISESGAVM KLAFGEEKGS NSNLHAQSIL QCLVQDSSGI DPQISHPNFL  1200
KVDSVEKSCK LEVRDAPKRP MNRDGYAERE NHLLRHVGSS EFPCSHPFNK PIIEDMNRTI  1260
NHTSFPVVRA LSKPDINCNS TYVAEEQECR LQNCNSSKPC HRSAELPFSP PNVEFGHDHR  1320
KNTSRSGSAS DSDVPCRKGD VKLFGQILSH APSQQNSSSG SNECGTKKGL HKSSSTYDMG  1380
ENAPSRSYGF WDGNGLQTGL SAMPDSIVLQ AKYPAAFSGY AATSVKTEQQ PLLTLTKNDD  1440
QAYKTVDGVK KRPYPVDIFS EIHRRNGFDS LSLASLQQQG RMLVGMNVVG RGGIVVGNSC  1500
TGISDPVAAI KMHYAKADQY VDGSWRGGNG DIGSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-106	MYB family protein