PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023541562.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27761.9 Da    PI: 9.1078
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023541562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-204497456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++f++eq++ Le+ F++ +++++ +++ +LA++lgL+ rq++vWFqNrRa++k
  XP_023541562.1 44 KRRFSDEQIRSLESIFYSsDSKLDSRKKVQLAAELGLQPRQISVWFQNRRARWK 97
                    578**************98**********************************9 PP
2HD-ZIP_I/II117.67e-3843135293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE+ F +++ kL++++Kv+la eLglqprq+ vWFqnrRAR+k+kq+E+d+++L+++yd+l+++ ++L++e+++L ++l++
  XP_023541562.1  43 NKRRFSDEQIRSLESIFYSSDsKLDSRKKVQLAAELGLQPRQISVWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQK 135
                     69***************88777********************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MERQEYIKIQ NFEVASSQTC PTPRRKKKKK KKKKKKKKSN NMNKRRFSDE QIRSLESIFY  60
SSDSKLDSRK KVQLAAELGL QPRQISVWFQ NRRARWKSKQ MENDFRSLRA SYDNLASQFR  120
TLQEENNSLL SQLQKLGELV EEEPGEGCYS NNFGKNADEN QAKLEILEDE PEQNGVTYLN  180
NNSKTENGGG HQATHLLEGR SNGISHSEEQ VWCDFESDGG VIFEYQPCSS LHLQGPSFWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430RRKKKKK
22432RRKKKKKKK
32438RRKKKKKKKKKKKKK
42531RRKKKKK
52533RRKKKKKKK
62539RRKKKKKKKKKKKKK
72638KKKKKKKKKKKKK
82632RRKKKKK
92634RRKKKKKKK
102640RRKKKKKKKKKKKKK
112739KKKKKKKKKKKKK
122733RRKKKKK
132735RRKKKKKKK
142741RRKKKKKKKKKKKKK
152840KKKKKKKKKKKKK
162834RRKKKKK
172836RRKKKKKKK
182842RRKKKKKKKKKKKKK
192941KKKKKKKKKKKKK
202935RRKKKKK
212937RRKKKKKKK
222943RRKKKKKKKKKKKKK
233036RRKKKKK
243038RRKKKKKKK
253044RRKKKKKKKKKKKKK
263137RRKKKKK
273145RRKKKKKKKKKKKKK
283238RRKKKKK
293246RRKKKKKKKKKKKKK
3092100RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-37HD-ZIP family protein