PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541981.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32836.6 Da PI: 5.0231

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.5e-19	100	153	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk l+L+ rqV +WFqNrRa++k XP_023541981.1 100 KKRRLTSDQVRFLEKSFEIDNKLELERKVQLAKDLELKPRQVAIWFQNRRARWK 153 56789************************************************9 PP
2	HD-ZIP_I/II	119.7	1.5e-38	99	189	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe ++kLe erKv+la++L+l+prqva+WFqnrRAR+ktkqlEk+yeaL+++y +lk e e+L ke+++L++++ XP_023541981.1 99 EKKRRLTSDQVRFLEKSFEIDNKLELERKVQLAKDLELKPRQVAIWFQNRRARWKTKQLEKNYEALQSSYGSLKVEYEKLLKEKDSLKAKI 189 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MAVRRVYGGG DDGGSISGVS SNHTVFLQNR KGSSVSEPLN ALFVSGSSSS TSPSMLGSKS 60 TISFKDIHGR NGSTRPFFYS FDTEDNGNED LDDYFHHPEK KRRLTSDQVR FLEKSFEIDN 120 KLELERKVQL AKDLELKPRQ VAIWFQNRRA RWKTKQLEKN YEALQSSYGS LKVEYEKLLK 180 EKDSLKAKIL VLTDKLLLKA KEKGSSVVSE VDKSSDIFNT DSPLVEPRDS SYIFDPDQSD 240 LSQDEDDNMG KNLLPTYVFP KLEDVDCSDP PASACSFVFP IDEDSALWSW S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-34	HD-ZIP family protein