PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542000.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 219aa    MW: 24106.8 Da    PI: 8.0433
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.3e-294106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++dC+++p++     p++q++++ +++k++G++ + +l++a+ e+ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+
  XP_023542000.1   4 SCNGCRILRKGCSHDCIIRPCLqwipsPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQA 98 
                     6************************9999****************************************************************** PP

          DUF260  91 kaelallk 98 
                     +++++l++
  XP_023542000.1  99 AVDAVLTG 106
                     *9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MRMSCNGCRI LRKGCSHDCI IRPCLQWIPS PDSQANATIF LAKFYGRAGL FNLITAAAEH  60
LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWDKCQAAV DAVLTGSMIV EPDAPLSNTN  120
LSLKCCDIRH VCNDTNLAVP GELHKGKTRN RFKKPDNRTK SKPGPGNELG SGSNVEVIEI  180
DRMADDLMTN RRKPGWVLRN GMWVEEEDVA LELTLNSAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-63LBD family protein