PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542028.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 494aa MW: 55330.3 Da PI: 9.2619

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	80.2	2.5e-25	196	249	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp++ Wt+ LH+rF++a++ + G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ XP_023542028.1 196 KPKVIWTNSLHNRFLQAIKLI-GLDKAVPKKILEFMNVPGLTRENVASHLQKYRI 249 799**************99.******************************6 PP
2	Myb_DNA-binding	32.7	1.7e-10	201	248	4	48
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ ++++a+k+ G + +k+I + m+ g+t++++ s++qky+ XP_023542028.1 201 WTNSLHNRFLQAIKLIGLDkaVPKKILEFMNvPGLTRENVASHLQKYR 248 ***********************************************7 PP
3	Response_reg	65.9	1.9e-22	15	121	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + + ++ +l+ +y +v + +++ eal++l++++ +Dl+l+D+ mp+++Gl+l k+ +e klp+i+++a ++++ +l+ l+ G XP_023542028.1 15 VLLVDDDATSLAVVSAMLRVCKY-QVVTLKNPMEALDTLRARKgfFDLLLTDLHMPQLSGLQLQKQVMQEF-KLPVIMMSADEKPSVILKSLEEG 107 89*******************.9999*******999999******************9988.9****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 + + +Kp++ +++ XP_023542028.1 108 VAFYMVKPISLNDV 121 *******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MGEVCEGVKF VDIHVLLVDD DATSLAVVSA MLRVCKYQVV TLKNPMEALD TLRARKGFFD 60 LLLTDLHMPQ LSGLQLQKQV MQEFKLPVIM MSADEKPSVI LKSLEEGVAF YMVKPISLND 120 VKHVWQYAIT PKKVSPDQTT TIIPHELSIQ IQKSSFKNSS SSPSCSRREI KSKSSEPKNK 180 KAKESKVAKN SIAMRKPKVI WTNSLHNRFL QAIKLIGLDK AVPKKILEFM NVPGLTRENV 240 ASHLQKYRIF LKRVAEKGAR SMKIYCDNVL QRSNSAAPHV QYPLYRSKLQ AQHPNFPQNQ 300 QLMVPLNNQS PTLGSFKQPT PQNPNLEGAS MENPLAHFWN QKYSTLLTIN KLNFPNFNGD 360 QNFVLVRNEN PKCSSDGTGR TTGEDRMICS SRNGVCNVQA SDDLNNGGCA SIGSYFGQFE 420 GTNQLLPVVS NINVEKNVLV SSEEEVGNDN IWKAANESNA FGDIGEDQSY FDVLSDIFMG 480 HNDTQTSLQV RFRT

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MGEVCEGVKF VDIHVLLVDD DATSLAVVSA MLRVCKYQVV TLKNPMEALD TLRARKGFFD  60
LLLTDLHMPQ LSGLQLQKQV MQEFKLPVIM MSADEKPSVI LKSLEEGVAF YMVKPISLND  120
VKHVWQYAIT PKKVSPDQTT TIIPHELSIQ IQKSSFKNSS SSPSCSRREI KSKSSEPKNK  180
KAKESKVAKN SIAMRKPKVI WTNSLHNRFL QAIKLIGLDK AVPKKILEFM NVPGLTRENV  240
ASHLQKYRIF LKRVAEKGAR SMKIYCDNVL QRSNSAAPHV QYPLYRSKLQ AQHPNFPQNQ  300
QLMVPLNNQS PTLGSFKQPT PQNPNLEGAS MENPLAHFWN QKYSTLLTIN KLNFPNFNGD  360
QNFVLVRNEN PKCSSDGTGR TTGEDRMICS SRNGVCNVQA SDDLNNGGCA SIGSYFGQFE  420
GTNQLLPVVS NINVEKNVLV SSEEEVGNDN IWKAANESNA FGDIGEDQSY FDVLSDIFMG  480
HNDTQTSLQV RFRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07210.1	7e-48	ARR-B family protein