PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542083.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29257.9 Da    PI: 9.313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.7e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e+s
  XP_023542083.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFS 58
                    79***********************************************8 PP
2K-box91.41.6e-309317419100
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++ +Lk+ +e +q++qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K++ l++q+ elq+ke++l e+n++Lrkklee
  XP_023542083.1  93 DDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMDQLAELQRKEHMLVEDNRSLRKKLEE 174
                     6899***************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFSGG  60
SSMTKTLEKY RRCSYDIRDG ARHLNNNGPQ SFDDYLNLKA TVEFMQQSQR NLLGEDLGPL  120
NAKELEQLEH QLETSLERIR STKTRTLMDQ LAELQRKEHM LVEDNRSLRK KLEESSAQVA  180
AASAAWGWEG GAGGHSMDYS SRIASQSDAF FYPITQPIPT LQIGYNSVGS VGLSNNNTHN  240
NNTNAGAPPQ NGNGFQLGWM L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.16e-78MIKC_MADS family protein