PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542111.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24893.8 Da    PI: 8.3341
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-151051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i n+  r+ tf kR++g lKK  EL +LC+++++ iifs+ 
  XP_023542111.1 10 FITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPF 51
                    799*************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MTRKKVKLTF ITNDAARKAT FKKRKKGFLK KLTELTTLCG IDACAIIFSP FNSYPDLWPS  60
LVGVHSVISH FKALPEMDQC KKMVNQDTFL RHRIAKAADQ LKKLQRDNRE KEIAHLMFQS  120
LLAGGAPRPT LNVIDLNDLG WLVDQKMADI SKRIELLSSA VAVEHNQPPC VATVEPSWFI  180
EMVNQEYDDQ MRFDIGDDVI QLPTFGEDGW PNNAFFPSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTFITNDAARKATFKKRK
21732RKATFKKRKKGFLKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-53M-type_MADS family protein