PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542208.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 902aa    MW: 100138 Da    PI: 6.3447
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_023542208.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218
                     99*****************************9445444.38************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_023542208.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp1193.9e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_023542208.1 253 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    
MRLSAAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDTQIPNYPS LPPQLICQLH NLTMHADADT DEVYAQMTLQ PLSAQELKEA YLPAELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFFNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRQWPTG LPSFGIKDSD LGMNSPFMWL RGDNSDRGIQ CLNFQGNGVS  420
PWMHPRLDPS MVGMQSDVYQ AMAAAALQEM RAIDYSKLAP ASMLQFQQPQ GLPCQPSTLM  480
QPQMLHQSQS QHAFLQSVQE HQQHSQSQTQ TQSHHLQPQL QPEPSFNNQQ PQHQQQPRQP  540
QPQPPPQPQP QPLVDHQPIP CTIPAISQFA SCSQSQSPSL QTVPSLCQQP SFSDSNGNPV  600
TSPTVSPFHS LAGSFVQDES SQLLNIQRAN SVIPSAGWPS KRSAIDPLST GASQYFLPQV  660
ESGMSQNTVA LPPFPGRECA IGDRDEGSDP ENHVLFGVNI ESSSLLMQNG MSNLRGVGND  720
NVSTTLPFSS NYMSSSGTDF SVNPTTNCID ESGFLQPHEN VGQVNQPNGT FVKVHKSGTY  780
SRSLDITKFN NYLELRSELA RMFGLEGELE DPLRSGWQLV FVDRENDVLL LGDGPWPEFV  840
NSVWCIKILS PDEVQEMGKR GLELLNSMPI QRLSNNTCDD YGSRQDSRNL ISGITSVGPF  900
DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein