PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542218.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family RAV
Protein Properties Length: 338aa    MW: 37241.7 Da    PI: 9.8447
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.3e-134391155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_023542218.1 43 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 91
                    689***9788.8*********3.....5**********99*************98 PP
2B391.18.6e-29171277195
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ tpsdv+k++rlv+pk++ae++            +  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F 
  XP_023542218.1 171 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgsagsagSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFL 265
                     89**************************999999887633334677899999999***************************************9 PP

                     E-SSSEE..EEE CS
              B3  84 ldgrsefelvvk 95 
                      +  ++++l++ 
  XP_023542218.1 266 KSTGEDKQLYIE 277
                     544477767665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MDQQPTTSIK SPPPDTSLVL DSADSSSAVG GGVEAESRKL PSSRFKGVVP QPNGRWGAQI  60
YEKHQRVWLG TFNEEDEAAR AYDVAAQRFR GRDAVTNFKT LSHGQVDDVV SAFLNSHSKA  120
EIVDMLRKHT YLDELHQSKR NADLLSSDRK RNGSLLSGSD NEPDSARELL FEKAVTPSDV  180
GKLNRLVIPK QHAEKNFPLQ TGSAGSAGSA ASSKGLLLNF EDGVGKVWRF RYSYWNSSQS  240
YVLTKGWSRF VKEKNLTAGD VVSFLKSTGE DKQLYIEWKA SKSAASTGSS TNPVQTVRLF  300
GVDIMKVTPS SGCSEKRRRE MEFLSSECNK KQRIVGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-125RAV family protein