PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542245.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 212aa    MW: 23489.4 Da    PI: 4.2616
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.61.3e-35151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA  r+rdP yG+v++i++lqq++ +l++e+
  XP_023542245.1  15 SCGACKFLRRKCSNHCVFAPFFTYDEaTSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEI 109
                     6*********************998868******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_023542245.1 110 DMLGSQ 115
                     999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MTGLTSSSSS SSSSSCGACK FLRRKCSNHC VFAPFFTYDE ATSHFAAVHK VFGASNVSKL  60
LLHLPMHIRS HAAITVAYEA LERMRDPTYG CVAHIFALQQ EIVSLQEEID MLGSQIANFT  120
ADMDNVAVVE NPCIELQVSK QLNDLVMNTN DYQNELLSQL PTFDEVETND AQMISPLFCI  180
GEEEGFFGCN PNNAMENSAF DVSVDENFAY LW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-59LBD family protein