PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542280.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24419.3 Da PI: 4.4977

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	43	96	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++ql+ Le+ F ++++ ++++ ++A+++gL rqV vWFqNrRa+ k XP_023542280.1 43 KKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSK 96 45689***********************************************99 PP
2	HD-ZIP_I/II	111.1	7.2e-36	42	134	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +q++lLE+sF+ ++kLe++rK ++a+e+gl+prqvavWFqnrRAR ktk++ dy++L ++y++lk+e ++L k ++eL++e++e XP_023542280.1 42 EKKRRLTPDQLRLLETSFDVHNKLEHDRKLQIAEEIGLRPRQVAVWFQNRRARSKTKKIVFDYDSLNSQYQNLKNEFDSLVKLNQELKTEVDE 134 69**************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MFFISSAKKP SPFDNPGCTH FPVMNSDTPP SLSSPNSFSS MEKKRRLTPD QLRLLETSFD 60 VHNKLEHDRK LQIAEEIGLR PRQVAVWFQN RRARSKTKKI VFDYDSLNSQ YQNLKNEFDS 120 LVKLNQELKT EVDELREKWA ATEKMKNPFE PDELEAMDSS VTELLGESFL QDEEDELGYL 180 GKLEDELSAN EFMDSFDLCA SGLIDFKYDS Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-32	HD-ZIP family protein