PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542452.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 925aa MW: 104148 Da PI: 6.6943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.7	7.3e-09	196	249	23	76
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 +gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ XP_023542452.1 196 SGKTRADKDREVAEYLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQL 249 4578889999*************************************9976655 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MPENTETSHQ HDYDSSSPKH PLDDSLETRP PNGGGGGGHL HRRHFHHHDS STPFISTPLY 60 LPTGTGNTPP FEAVNPKRTR YSAGQWKLVP SPSSFQPQIA IVGSDSSPSP SQRPAGTAAA 120 SSSDTTSSPS HSPLPLTTGN KGEGESQNQP QYRKGKYVSP VWKPNEMLWL ARAWRVQYQG 180 GSDEGGIMGG QGGRGSGKTR ADKDREVAEY LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW 240 ERGGEREQLM GKSYFRLSPY ERKLHRLPAS FDEQVFEELS QFMGSKMRTK PTPILPLTRP 300 LPPPPPFTEE HLPILSREKQ VFRVDYASVD CSSVRRIGKV RMVWEESVSL WGEEGSEEQR 360 GGMIRVEGCS FLNADELTFF DESMVACTME CNDDGPLKGL SVDRFVPGQQ IKVFGRRKSP 420 FYTSTVPHER PPILHSTELS SRSSSLWNYQ DSTEYYVGCL RIPPLSLPSL SELPWHIQEP 480 PSEELRFPIR KDVYAYLPQG KEVFFTTTTE MVDCKSFIYE ILCPIIRTNP CISTTTPPSS 540 RDSFIGLWDD CINRLVSEFC CMEMQIIRKP NSPSSTNIHS LQDQWPNLTG FIRNFCLWRG 600 EETDQIKDGH QDLDPSNSIV EKLLWTYLDI PYLLGYYTIG FLVTFCSLSR GRDNRVVRTD 660 LYSLDLSTPS ERLKALVPCY RIGGVLSLLA DRCKKLPIYS DFERIDMGNG IVVEMTPNLV 720 TKIFSCRRKW TAAKEIYDVL DQRIPHSEFI FGASEEDLAL VFKPRVCRLK PTSYDQLIEA 780 LKNVTKALVA LHDLCFMHRD ICWEKVMKKT NDDETATGEW ILCGFEEAVG APQIYPYGEA 840 TAASGRHAPE MERGLHGVKV DMWGVGFLIK TCGLIGIPKM LNELQNRCMD QNPEHRPTAA 900 DCYHHLLQLQ SSLSTSTGAA GGGLI

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MPENTETSHQ HDYDSSSPKH PLDDSLETRP PNGGGGGGHL HRRHFHHHDS STPFISTPLY  60
LPTGTGNTPP FEAVNPKRTR YSAGQWKLVP SPSSFQPQIA IVGSDSSPSP SQRPAGTAAA  120
SSSDTTSSPS HSPLPLTTGN KGEGESQNQP QYRKGKYVSP VWKPNEMLWL ARAWRVQYQG  180
GSDEGGIMGG QGGRGSGKTR ADKDREVAEY LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW  240
ERGGEREQLM GKSYFRLSPY ERKLHRLPAS FDEQVFEELS QFMGSKMRTK PTPILPLTRP  300
LPPPPPFTEE HLPILSREKQ VFRVDYASVD CSSVRRIGKV RMVWEESVSL WGEEGSEEQR  360
GGMIRVEGCS FLNADELTFF DESMVACTME CNDDGPLKGL SVDRFVPGQQ IKVFGRRKSP  420
FYTSTVPHER PPILHSTELS SRSSSLWNYQ DSTEYYVGCL RIPPLSLPSL SELPWHIQEP  480
PSEELRFPIR KDVYAYLPQG KEVFFTTTTE MVDCKSFIYE ILCPIIRTNP CISTTTPPSS  540
RDSFIGLWDD CINRLVSEFC CMEMQIIRKP NSPSSTNIHS LQDQWPNLTG FIRNFCLWRG  600
EETDQIKDGH QDLDPSNSIV EKLLWTYLDI PYLLGYYTIG FLVTFCSLSR GRDNRVVRTD  660
LYSLDLSTPS ERLKALVPCY RIGGVLSLLA DRCKKLPIYS DFERIDMGNG IVVEMTPNLV  720
TKIFSCRRKW TAAKEIYDVL DQRIPHSEFI FGASEEDLAL VFKPRVCRLK PTSYDQLIEA  780
LKNVTKALVA LHDLCFMHRD ICWEKVMKKT NDDETATGEW ILCGFEEAVG APQIYPYGEA  840
TAASGRHAPE MERGLHGVKV DMWGVGFLIK TCGLIGIPKM LNELQNRCMD QNPEHRPTAA  900
DCYHHLLQLQ SSLSTSTGAA GGGLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-07	Trihelix family protein