PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542488.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 126aa MW: 14712.9 Da PI: 11.028

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.9e-13	12	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g+W+ eEde l ++v+++G ++W++ r g + Rt+k+c++rw + XP_023542488.1 12 KGPWSVEEDEVLMNYVNKFGARDWSS-LRSKGlLPRTGKSCRLRWVN 57 79**********************.66667788********87 PP
2	Myb_DNA-binding	44.9	2.7e-14	68	109	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++E+ +++ +q+G++ W++Ia +++ gRt++++k++w + XP_023542488.1 68 KFSADEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFWST 109 79****************.*****.*********65 PP

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence
MERKRDGTQM KKGPWSVEED EVLMNYVNKF GARDWSSLRS KGLLPRTGKS CRLRWVNKLQ 60 PNLKTGCKFS ADEERVVIEL QAQFGNKWAK IATYLPGRTD NDVKNFWSTR RKRLGRILQT 120 PPQKSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	2e-66	MYB family protein