PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542668.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 430aa MW: 47692.1 Da PI: 5.0315

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.6e-12	123	145	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_023542668.1 123 EDCAFYLRTGTCKFGSLCKFNHP 145 78********************9 PP
2	zf-CCCH	21.3	4.7e-07	151	169	7	25
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG Ck+G C+++H XP_023542668.1 151 QYYSRTGGCKFGTACRYNH 169 59***************** PP
3	zf-CCCH	34.2	4.4e-11	194	216	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_023542668.1 194 KECPYYMRTGCCKYGANCKFNHP 216 68********************9 PP
4	zf-CCCH	19.4	1.9e-06	318	344	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_023542668.1 318 PGQPECSYFLKTGDCKFKSLCIYHHPK 344 5789*********************96 PP
5	zf-CCCH	35.8	1.3e-11	366	389	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G++CkF H+ XP_023542668.1 366 QNVCTYYSRYGICKFGPSCKFDHP 389 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MEPSEAVSVL IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEEE EEMVVDAGDG GEVEKDGEMR GGNNRYPVRS 120 EAEDCAFYLR TGTCKFGSLC KFNHPLRKRH QYYSRTGGCK FGTACRYNHT RPRALPNPIL 180 ELNFLGLPIR LNEKECPYYM RTGCCKYGAN CKFNHPDPTT VAVPESLSGY NNGVLLQGGA 240 SQSQITSWTS PRVLNETPTF VPAMISPSQD SEWNAYQAPM YPSEISMLPP PTYAVNNIAS 300 ETDLYPSHQQ VEEHPERPGQ PECSYFLKTG DCKFKSLCIY HHPKNWNLKL PTCTLNDKGL 360 PLRPDQNVCT YYSRYGICKF GPSCKFDHPI LPASSTSELK QQPHYSNFNA AEGAEMGGGS 420 GNGVTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MEPSEAVSVL IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE  60
AAVKDFDGGG EWEVEKNPVE GEGNLEEEEE EEMVVDAGDG GEVEKDGEMR GGNNRYPVRS  120
EAEDCAFYLR TGTCKFGSLC KFNHPLRKRH QYYSRTGGCK FGTACRYNHT RPRALPNPIL  180
ELNFLGLPIR LNEKECPYYM RTGCCKYGAN CKFNHPDPTT VAVPESLSGY NNGVLLQGGA  240
SQSQITSWTS PRVLNETPTF VPAMISPSQD SEWNAYQAPM YPSEISMLPP PTYAVNNIAS  300
ETDLYPSHQQ VEEHPERPGQ PECSYFLKTG DCKFKSLCIY HHPKNWNLKL PTCTLNDKGL  360
PLRPDQNVCT YYSRYGICKF GPSCKFDHPI LPASSTSELK QQPHYSNFNA AEGAEMGGGS  420
GNGVTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-114	C3H family protein