PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542707.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 344aa MW: 38467.5 Da PI: 8.1134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq XP_023542707.1 166 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 213 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MAAFSYQYQP FLLDSILQAN NPLKMGGFLD EPNFNINCFT QFFAQEQEQE QPIHRFPELC 60 KRSPESFSLV EKSDSGEPPV VSQLKPTVTS PCSKKRKSRG NNSSACSAQS KESIGKKVKT 120 KRELDERKEG DEKGKTGKKE EKKGSEDGAP TGYIHVRAKR GQATDSHSLA ERVRREKISE 180 RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLTSLNPIL FDFRMDLDGL 240 MIQPESSSLS SITPQLPAMA QCNVISPPTL IDTTTTTTPT PTIATNTYPL TDNSANLFLF 300 QQAMNPNAYT QSQDNVKVSS WDVEEHKRKL LISSGIGDNL SYFH

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MAAFSYQYQP FLLDSILQAN NPLKMGGFLD EPNFNINCFT QFFAQEQEQE QPIHRFPELC  60
KRSPESFSLV EKSDSGEPPV VSQLKPTVTS PCSKKRKSRG NNSSACSAQS KESIGKKVKT  120
KRELDERKEG DEKGKTGKKE EKKGSEDGAP TGYIHVRAKR GQATDSHSLA ERVRREKISE  180
RMKTLQRLVP GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLTSLNPIL FDFRMDLDGL  240
MIQPESSSLS SITPQLPAMA QCNVISPPTL IDTTTTTTPT PTIATNTYPL TDNSANLFLF  300
QQAMNPNAYT QSQDNVKVSS WDVEEHKRKL LISSGIGDNL SYFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	121	KKRKSRGNNSSACSAQSKESIGKKVKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	5e-54	bHLH family protein