PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542725.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 301aa MW: 34144.5 Da PI: 6.9765

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542725.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd++++ G g+W+ ++ g+ R++k+c++rw +yl XP_023542725.1 14 KGPWTPEEDHKLVDYIHKNGHGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.6	5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia +++ gRt++++k++w+++ XP_023542725.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIATRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRTPCCDST GLKKGPWTPE EDHKLVDYIH KNGHGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIATRLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSAILR STLYSSSQMK VSSLLGVQPL VNPELLKLAA SLMSCERKSP 180 SFSPQNSSPT IQFPHEQQLV EPTGTEFNDE WLSGPILPSC LNLDANFELL GYDYHGLDQQ 240 ELARTEGKNK NKNLCSPCSS SPTQMNSNSS NFTSAAEDEK ESYCSQILNF ELHDIFDEAF 300 M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-102	MYB family protein