PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023542767.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 536aa    MW: 59722 Da    PI: 8.8095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023542767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.4e-17134224199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+kv++ps+ +   +l lp+ f+++h   +++++ ++l+de+g  ++ k+  +k++    l++GW++F  a++L++gD++vF+l+  ++f  +v 
  XP_023542767.1 134 FIKVMLPSHITGGFWLGLPRGFCDSHL--PRQDTAMILQDENGMAYQTKYLSEKTG----LSAGWRGFSLAHNLQQGDVLVFHLVMPNKF--MVY 220
                     89************************5..457889***************444444....***********************9865666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_023542767.1 221 IVRS 224
                     9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
SRNGVTSSTD QAVRCLGIVR TSGSPYFIFI SSSSISILIL QKNHTEISAP SSPKMNRGRP  60
RKEKLFRRKS WASITPPGTS YGQEAAVQSF SLPRSVKFKR TTIDSIYNDR QSRSIVMAQA  120
KEVQAKLPPG FPSFIKVMLP SHITGGFWLG LPRGFCDSHL PRQDTAMILQ DENGMAYQTK  180
YLSEKTGLSA GWRGFSLAHN LQQGDVLVFH LVMPNKFMVY IVRSNAVAED GGAPGFEPVY  240
IVRSNAAVAE DGGAPGFERR AYNKQTPLYG KENVPYMKEK QMALDNVNGK EADIHPVKNE  300
EDDNPVSLAI DIHKDHGQTS GPVHKDTEMM PVLEESENNR NSFGSNSMNG IQLSNYTPDF  360
DKVKSLNDFI ISVNGLVIDS EFSSHFRAKY FELCSSQKAF LHAHILEGLN YKLVSGIISE  420
TINIADAIRA CKVGITSQEH YTTWDKSLTA FEGLGMNVAF LRSRIYRLLT LSIKIEMKRK  480
MELKRDSTQE EIRTLVAKIM EARAAVKQLE AEIQCLENTD GGNMEALFKE VASAPW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-39B3 family protein