PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542775.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 195aa MW: 22391.7 Da PI: 10.5205

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.5	6.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv+fskRrng+lKKA+EL vLCdaevav+ifs++gk y +ss XP_023542775.1 9 KRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSS 59 79***********************************************96 PP
2	K-box	67.4	4.8e-23	86	169	15	98
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ e++ +++ i +L+ +Rh+ GedLe+L++keL++Le+qL +++++Rsk +++ e++++l+kk k lqee+ +L+k+l XP_023542775.1 86 LVWKSEMEDMNRSITSLEARLRHFSGEDLEPLTVKELKRLERQLSVGIERVRSKMRRIISEHTNQLKKKYKGLQEEHSRLQKRL 169 5699*****************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MGRGKVEVKR IENPTSRQVS FSKRRNGVLK KAYELAVLCD AEVAVVIFSP SGKAYQFSSH 60 DIDGTLARYR KYVGQSQFNH PLSRALVWKS EMEDMNRSIT SLEARLRHFS GEDLEPLTVK 120 ELKRLERQLS VGIERVRSKM RRIISEHTNQ LKKKYKGLQE EHSRLQKRLN QLKDVADTTA 180 KVSDADGVSV LEMFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26310.1	4e-45	MIKC_MADS family protein