PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542828.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 444aa MW: 49841.9 Da PI: 5.7777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.6	1.2e-32	84	223	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk.... 79 lp+G++F+P+d+e+v +L++kv + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t XP_023542828.1 84 LPRGVKFDPSDQEIV-WHLQAKVGIGGsrlhpfI---DefiptVLEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITGddfg 173 799**********.889999987774565442...144444677778******.677888899**************54445655 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l XP_023542828.1 174 DVRWHKTGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 223 788********.99********6522666778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MKHNLFALYI RTQPSPCRCL LGVVFAFCRP SWLVDSNRIA TKIRSASGTS HPRSVEWKSN 60 PSRSCPNCQH TIDNSDVAQE WPGLPRGVKF DPSDQEIVWH LQAKVGIGGS RLHPFIDEFI 120 PTVLEDDGIC YTHPQKLPGV KQDGSVSHFF HRAIKAYNTG TRKRRKITGD DFGDVRWHKT 180 GRTKPVVIDG VQKGCKKIMV LYMSFAKGGR AEKTNWVMHQ YHLGTGEDER DGEYVISKIF 240 YQQQNVKHGE VTEQEIPQIV DAVKVDPRTP KSATPEPPRV ECRCVNVDQE QDSVVISTSA 300 LVEVPSESDK SDKHDTIKLD GCSVEVINDN ENNIDEEPKW WEGESQNILN SQQLVEALSL 360 CDDLLQSQSP PRDGNANNGA SRSKSLFSEY SKLGPEDLKK DLEECQNLVL DPGNIELDTP 420 PEFRLSQLDF GSQESFLAWG GKAE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MKHNLFALYI RTQPSPCRCL LGVVFAFCRP SWLVDSNRIA TKIRSASGTS HPRSVEWKSN  60
PSRSCPNCQH TIDNSDVAQE WPGLPRGVKF DPSDQEIVWH LQAKVGIGGS RLHPFIDEFI  120
PTVLEDDGIC YTHPQKLPGV KQDGSVSHFF HRAIKAYNTG TRKRRKITGD DFGDVRWHKT  180
GRTKPVVIDG VQKGCKKIMV LYMSFAKGGR AEKTNWVMHQ YHLGTGEDER DGEYVISKIF  240
YQQQNVKHGE VTEQEIPQIV DAVKVDPRTP KSATPEPPRV ECRCVNVDQE QDSVVISTSA  300
LVEVPSESDK SDKHDTIKLD GCSVEVINDN ENNIDEEPKW WEGESQNILN SQQLVEALSL  360
CDDLLQSQSP PRDGNANNGA SRSKSLFSEY SKLGPEDLKK DLEECQNLVL DPGNIELDTP  420
PEFRLSQLDF GSQESFLAWG GKAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-165	NAC family protein